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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
1
FAIRE-seq
Assay category
DNA binding
37
DNA accessibility
7
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
3
control
Date released
30
June, 2019
14
July, 2019
March, 2020
2
November, 2018
1
February, 2023
1
October, 2017
1
October, 2019
Available data
45
bigWig
42
bam
35
bed bed3+
33
bed narrowPeak
33
bigBed narrowPeak
32
bed broadPeak
32
bigBed broadPeak
7
tsv
3
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
49
Homo sapiens
Biosample type
37
tissue
12
primary cell
Organ
319
pancreas
261
epithelium
240
kidney
182
heart
97
bone element
70
vasculature
67
blood vessel
55
connective tissue
51
artery
49
brain
49
limb
48
liver
48
musculature of body
37
eye
19
adipose tissue
19
lung
18
ureter
12
skeleton
9
blood
9
bodily fluid
4
spleen
4
vein
3
nerve
1
bone marrow
1
embryo
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
49
AMP
Genome assembly (visualization)
41
GRCh38
36
hg19
Lab
49
AMP-T2D consortium
assay_slims!
DNA binding
month_released!
March, 2020
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
49 results
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DNase-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
FAIRE-seq
tissue
brain
14
1
1
frontal cortex
2
1
1
cerebellum (Hemisphere)
1
1
1
Ammon's horn
1
caudate nucleus
1
+ See 12 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
+ See 2 more…
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