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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
399
total RNA-seq
148
ATAC-seq
74
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
8
DNase-seq
8
Hi-C
3
RRBS
2
Capture-C
2
FAIRE-seq
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
475
Transcription
DNA binding
169
DNA accessibility
54
DNA methylation
8
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
157
July, 2018
104
May, 2022
94
August, 2017
57
May, 2021
56
February, 2023
42
November, 2019
40
September, 2018
39
April, 2018
32
February, 2021
19
September, 2020
March, 2020
10
November, 2020
8
January, 2021
8
July, 2019
7
August, 2020
7
November, 2018
5
March, 2019
5
October, 2017
5
October, 2019
5
September, 2017
4
August, 2021
4
June, 2019
3
August, 2018
3
October, 2022
2
October, 2018
1
August, 2022
1
February, 2020
1
June, 2018
Available data
489
bam
456
bigWig
412
tsv
324
fastq
80
zippedFastqFolder
74
bed narrowPeak
32
bigBed narrowPeak
9
bed broadPeak
8
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
7
bigBed broadPeak
6
bedpe bed3+
6
hic
6
txt
3
cool
1
bedpe
1
hdf5
Organism
718
Homo sapiens
Biosample type
382
tissue
277
primary cell
60
cell line
Organ
717
pancreas
529
connective tissue
417
adipose tissue
390
epithelium
300
kidney
252
heart
236
liver
159
bone element
130
vasculature
127
blood vessel
107
artery
66
brain
56
eye
56
limb
52
musculature of body
19
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
4
spleen
4
vein
2
pericardium
1
bone marrow
1
pituitary gland
1
skin of body
1
spinal cord
1
thymus
Project
541
AMP
152
HPAP
26
T1D
Genome assembly (visualization)
489
hg19
476
GRCh38
Lab
498
AMP-T2D consortium
152
Klaus Kaestner, Upenn
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
62
inconsistent ontology term
4
audit script error
Audit category:
1
inconsistent assembly
assay_slims!
DNA binding
month_released!
March, 2020
BIOSAMPLE
ASSAY
719 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
MeRIP-seq
DNase-seq
Hi-C
RRBS
Capture-C
FAIRE-seq
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
tissue
islet of Langerhans
282
56
7
4
1
3
1
1
body of pancreas
3
4
2
4
2
pancreas
1
2
4
2
1
1
pericardium
1
primary cell
pancreatic alpha cell
52
35
12
31
1
pancreatic beta cell
21
23
12
16
1
pancreatic acinar cell
4
9
12
1
pancreatic ductal cell
4
4
10
pancreatic delta cell
11
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cell line
EndoC_BH1
31
17
6
1
2
1
Panc1
1
1
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