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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
169
total RNA-seq
6
DNase-seq
4
Hi-C
3
ATAC-seq
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
DNA binding
173
Transcription
9
DNA accessibility
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Date released
144
May, 2020
May, 2022
13
August, 2021
8
July, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
3
November, 2018
2
August, 2017
2
June, 2019
2
October, 2019
1
December, 2018
1
February, 2020
Available data
174
tsv
170
bam
169
bigWig
10
fastq
8
bed narrowPeak
7
bed bed3+
6
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
192
Homo sapiens
Biosample type
161
tissue
22
cell line
9
primary cell
Organ
612
pancreas
524
connective tissue
412
adipose tissue
303
epithelium
298
kidney
249
heart
192
liver
159
bone element
131
vasculature
129
blood vessel
107
artery
66
brain
55
eye
55
limb
49
musculature of body
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
vein
3
spleen
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
192
AMP
Genome assembly (visualization)
174
hg19
170
GRCh38
Lab
179
AMP-T2D consortium
13
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
assay_slims!
DNA binding
DNA methylation
month_released!
May, 2022
BIOSAMPLE
ASSAY
192 results
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total RNA-seq
DNase-seq
Hi-C
ATAC-seq
pCHi-C
small RNA-seq
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
147
2
1
1
1
1
right lobe of liver
3
2
1
2
cell line
HepG2
14
2
1
2
2
1
primary cell
hepatocyte
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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