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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
3
Hi-C
Assay category
64
DNA accessibility
3
3D chromatin structure
Date released
64
August, 2021
3
October, 2022
Available data
1790
bam
1759
bigWig
1600
tsv
477
fastq
454
bed narrowPeak
241
bigBed narrowPeak
219
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
154
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
19
zippedFastqFolder
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tar
1
vcf
Organism
67
Homo sapiens
Biosample type
64
tissue
3
primary cell
Organ
64
kidney
3
epithelium
3
pancreas
Project
64
AMP
3
HPAP
Genome assembly (visualization)
64
GRCh38
3
hg19
Lab
64
Katalin Susztak, Upenn
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
assay_slims!
DNA binding
month_released!
May, 2022
BIOSAMPLE
ASSAY
67 results
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ATAC-seq
Hi-C
tissue
kidney
64
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
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