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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
single cell RNA-seq
44
total RNA-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
2
FAIRE-seq
Assay category
112
Transcription
27
DNA methylation
8
3D chromatin structure
8
DNA accessibility
Target of assay
3
control
Date released
707
February, 2021
291
May, 2020
276
August, 2021
234
May, 2021
205
February, 2023
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
85
bigWig
82
bam
65
tsv
23
bed bedMethyl
23
bigBed bedMethyl
7
bed narrowPeak
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
155
Homo sapiens
Biosample type
124
tissue
31
primary cell
Organ
58
kidney
25
heart
18
brain
18
connective tissue
13
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
10
liver
10
musculature of body
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
108
AMP
47
KPMP
Genome assembly (visualization)
91
hg19
79
GRCh38
Lab
108
AMP-T2D consortium
47
KPMP
Audit category:
2
inconsistent ontology term
assay_slims!
DNA binding
month_released!
May, 2022
BIOSAMPLE
ASSAY
155 results
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single cell RNA-seq
total RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
FAIRE-seq
tissue
kidney
47
1
1
heart left ventricle
2
1
4
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 26 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
+ See 20 more…
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