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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
17
total RNA-seq
5
ATAC-seq
4
small RNA-seq
3
Hi-C
3
pCHi-C
3
single cell RNA-seq
2
RRBS
2
WGBS
1
FAIRE-seq
Assay category
DNA binding
39
DNA accessibility
24
Transcription
4
DNA methylation
3
3D chromatin structure
Target of assay
3
control
Date released
30
June, 2019
18
July, 2019
12
February, 2020
5
November, 2018
3
March, 2020
2
October, 2017
2
October, 2019
1
February, 2023
Available data
54
bigWig
51
bam
36
bed bed3+
35
bed narrowPeak
34
bigBed narrowPeak
33
bed broadPeak
33
bigBed broadPeak
27
tsv
7
fastq
4
bed bedMethyl
4
bigBed bedMethyl
3
hdf5
1
bed bed3
Organism
73
Homo sapiens
Biosample type
61
tissue
12
primary cell
Organ
624
pancreas
531
connective tissue
418
adipose tissue
315
epithelium
302
kidney
259
heart
199
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
56
eye
56
limb
55
musculature of body
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
73
AMP
Genome assembly (visualization)
50
GRCh38
43
hg19
Lab
73
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
month_released!
May, 2022
BIOSAMPLE
ASSAY
73 results
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DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
pCHi-C
single cell RNA-seq
RRBS
WGBS
FAIRE-seq
tissue
brain
14
1
1
1
frontal cortex
2
2
1
1
spleen
1
1
1
2
cerebellum (Hemisphere)
1
1
1
1
Ammon's horn
1
1
1
+ See 21 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
+ See 2 more…
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