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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
total RNA-seq
23
ATAC-seq
4
Hi-C
4
WGBS
3
DNase-seq
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
DNA binding
193
Transcription
26
DNA accessibility
6
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Date released
144
May, 2020
40
May, 2022
13
August, 2021
10
July, 2019
6
August, 2017
5
December, 2019
5
January, 2019
November, 2018
3
February, 2021
3
March, 2020
2
June, 2019
2
October, 2019
1
December, 2018
1
February, 2020
Available data
186
bigWig
174
tsv
167
bam
25
bed narrowPeak
9
fastq
4
bed bed3+
3
bigBed narrowPeak
2
bed bedMethyl
2
bed broadPeak
2
bedpe bed3+
2
bigBed bedMethyl
2
bigBed broadPeak
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
235
Homo sapiens
Biosample type
203
tissue
22
cell line
10
primary cell
Organ
721
pancreas
530
connective tissue
417
adipose tissue
395
epithelium
302
kidney
259
heart
235
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
66
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
vein
2
intestine
2
pericardium
2
spleen
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
235
AMP
Genome assembly (visualization)
193
hg19
167
GRCh38
Lab
182
AMP-T2D consortium
40
Karen Mohlke, UNC
13
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
assay_slims!
DNA binding
month_released!
November, 2018
BIOSAMPLE
ASSAY
235 results
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total RNA-seq
ATAC-seq
Hi-C
WGBS
DNase-seq
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
20
1
3
1
1
1
1
right lobe of liver
3
1
1
1
2
cell line
HepG2
14
1
2
2
2
1
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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