Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
245
total RNA-seq
198
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
27
DNase-seq
17
pCHi-C
10
RRBS
9
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
434
Transcription
281
DNA accessibility
DNA binding
58
DNA methylation
9
3D chromatin structure
Target of assay
3
control
Date released
147
May, 2020
134
May, 2022
88
February, 2023
85
May, 2021
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
31
July, 2019
24
June, 2019
October, 2019
8
January, 2021
7
August, 2020
6
August, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
361
bigWig
360
bam
315
fastq
268
tsv
153
zippedFastqFolder
64
bed narrowPeak
49
bigBed narrowPeak
32
bed bed3+
26
bed broadPeak
26
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
Organism
799
Homo sapiens
Biosample type
1823
tissue
799
primary cell
188
in vitro differentiated cells
171
cell line
7
stem cell
Organ
305
epithelium
276
pancreas
27
connective tissue
17
kidney
12
brain
10
vasculature
9
liver
8
blood
8
bodily fluid
8
heart
7
blood vessel
4
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
1
vein
Project
354
AMP
324
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
373
hg19
323
GRCh38
Lab
352
AMP-T2D consortium
324
Klaus Kaestner, Upenn
122
Kyle Gaulton, UCSD
1
ITG
Audit category:
30
audit script error
27
inconsistent ontology term
assay_slims!
DNA binding
month_released!
October, 2019
BIOSAMPLE
ASSAY
799 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
35
12
31
1
pancreatic beta cell
21
23
12
16
1
monocyte
54
15
1
1
exocrine cell
39
+ See 90 more…
See all biosamples
Download