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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
pCHi-C
15
total RNA-seq
11
ATAC-seq
10
Hi-C
Assay category
15
Transcription
11
DNA accessibility
10
3D chromatin structure
DNA binding
Date released
707
February, 2021
291
May, 2020
276
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
45
tsv
24
bigWig
13
bam
12
bedpe bed3+
10
hic
7
fastq
2
ibed
Organism
68
Homo sapiens
Biosample type
38
tissue
10
cell line
8
in vitro differentiated cells
8
primary cell
4
stem cell
Organ
18
pancreas
12
epithelium
7
heart
5
musculature of body
4
blood vessel
4
vasculature
3
liver
2
brain
2
connective tissue
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
57
AMP
7
HPAP
4
T1D
Genome assembly (visualization)
29
hg19
20
GRCh38
Lab
61
AMP-T2D consortium
7
Klaus Kaestner, Upenn
Audit category:
16
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
68 results
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Clear Filters
pCHi-C
total RNA-seq
ATAC-seq
Hi-C
tissue
psoas muscle
1
2
2
islet of Langerhans
2
2
aorta
1
1
1
heart left ventricle
1
1
1
heart right ventricle
1
1
1
+ See 16 more…
cell line
EndoC_BH1
2
2
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
primary cell
pancreatic alpha cell
5
pancreatic beta cell
2
endothelial cell of umbilical vein
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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