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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
727
total RNA-seq
84
RNA microarray
56
ATAC-seq
27
snATAC-seq
19
pCHi-C
18
single cell RNA-seq
6
WGBS
3
snDrop-seq
1
DNAme array
Assay category
745
Transcription
DNA binding
83
DNA accessibility
7
DNA methylation
Date released
707
February, 2021
291
May, 2020
276
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
750
bam
732
tsv
726
bigWig
89
txt
45
fastq
31
bed narrowPeak
6
csv
4
bed bed3+
4
bed bedgraph
2
bed bed3
Organism
941
Homo sapiens
Biosample type
585
tissue
133
primary cell
115
in vitro differentiated cells
108
cell line
Organ
457
connective tissue
386
adipose tissue
151
bone element
89
pancreas
63
heart
60
artery
60
blood vessel
60
vasculature
54
epithelium
8
kidney
8
skeleton
6
limb
3
liver
2
embryo
1
bone marrow
1
thymus
Project
828
AMP
68
T1D
45
HPAP
Genome assembly (visualization)
762
hg19
749
GRCh38
Lab
815
AMP-T2D consortium
81
Kyle Gaulton, UCSD
45
Klaus Kaestner, Upenn
Audit category:
214
inconsistent ontology term
32
audit script error
1
inconsistent replicate
assay_slims!
DNA binding
month_released!
June, 2019
BIOSAMPLE
ASSAY
941 results
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total RNA-seq
RNA microarray
ATAC-seq
snATAC-seq
pCHi-C
single cell RNA-seq
WGBS
snDrop-seq
DNAme array
tissue
adipose tissue
381
bone element
84
bone tissue
58
islet of Langerhans
36
kidney
5
+ See 18 more…
primary cell
monocyte
52
13
1
1
Langerhans cell
27
12
pancreatic alpha cell
6
CD8-positive, alpha-beta T cell
2
1
osteoblast
1
1
1
+ See 14 more…
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
18
embryonic stem cell
5
5
induced pluripotent stem cell
9
adipocyte
4
4
+ See 11 more…
cell line
smooth muscle cell of the coronary artery
52
8
EndoC_BH1
30
16
HepG2
1
1
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