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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
638
total RNA-seq
125
ATAC-seq
84
RNA microarray
29
snATAC-seq
19
single cell RNA-seq
6
WGBS
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
2
pCHi-C
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
657
Transcription
154
DNA accessibility
DNA binding
6
DNA methylation
Date released
707
February, 2021
291
May, 2020
276
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
575
tsv
564
bam
549
bigWig
121
fastq
96
txt
83
bed narrowPeak
12
bed bed3
7
bed bedgraph
6
bed bed3+
6
csv
Organism
911
Homo sapiens
Biosample type
640
tissue
136
primary cell
94
cell line
42
in vitro differentiated cells
Organ
469
connective tissue
387
adipose tissue
158
bone element
96
heart
95
artery
95
blood vessel
95
vasculature
88
pancreas
84
epithelium
31
eye
16
skeleton
8
kidney
6
limb
3
liver
1
brain
Project
768
AMP
121
HPAP
23
T1D
Genome assembly (visualization)
614
hg19
598
GRCh38
Lab
765
AMP-T2D consortium
121
Klaus Kaestner, Upenn
23
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
139
inconsistent ontology term
32
audit script error
1
inconsistent replicate
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
912 results
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Clear Filters
total RNA-seq
ATAC-seq
RNA microarray
snATAC-seq
single cell RNA-seq
WGBS
CRISPR genome editing followed by DNA sequencing
snDrop-seq
HiChIP
pCHi-C
CRISPR genome editing followed by sgRNA sequencing
tissue
adipose tissue
381
1
bone element
84
bone tissue
58
coronary artery
35
islet of Langerhans
5
11
2
+ See 23 more…
primary cell
Langerhans cell
27
12
exocrine cell
39
pancreatic alpha cell
27
6
pancreatic beta cell
10
gabaergic neuron
3
+ See 4 more…
cell line
smooth muscle cell of the coronary artery
52
8
EndoC_BH1
26
3
2
1
HepG2
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
5
5
chondrocyte
5
immature adipocyte
2
2
preadipocyte
1
1
+ See 3 more…
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