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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
575
total RNA-seq
84
RNA microarray
44
ATAC-seq
27
snATAC-seq
18
single cell RNA-seq
10
DNase-seq
6
WGBS
6
pCHi-C
5
Hi-C
3
snDrop-seq
1
FAIRE-seq
Assay category
593
Transcription
DNA binding
82
DNA accessibility
6
DNA methylation
5
3D chromatin structure
Date released
707
February, 2021
291
May, 2020
276
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
595
bam
577
bigWig
575
tsv
89
txt
45
fastq
33
bed narrowPeak
12
bigBed narrowPeak
10
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
6
csv
4
bed bedgraph
4
hic
3
bedpe bed3+
2
bed bed3
1
hdf5
1
tar
Organism
779
Homo sapiens
Biosample type
592
tissue
95
cell line
58
primary cell
34
in vitro differentiated cells
Organ
458
connective tissue
387
adipose tissue
150
bone element
67
blood vessel
67
vasculature
63
artery
63
heart
43
epithelium
37
pancreas
19
eye
17
kidney
16
limb
8
skeleton
7
nerve
5
liver
4
vein
2
brain
1
pituitary gland
1
skin of body
Project
734
AMP
45
HPAP
Genome assembly (visualization)
608
hg19
594
GRCh38
Lab
734
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
139
inconsistent ontology term
33
audit script error
1
inconsistent replicate
Audit category:
1
inconsistent assembly
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
779 results
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total RNA-seq
RNA microarray
ATAC-seq
snATAC-seq
single cell RNA-seq
DNase-seq
WGBS
pCHi-C
Hi-C
snDrop-seq
FAIRE-seq
tissue
adipose tissue
381
1
bone element
84
bone tissue
58
islet of Langerhans
14
13
4
tibial nerve
4
1
2
+ See 18 more…
cell line
smooth muscle cell of the coronary artery
52
8
EndoC_BH1
26
HepG2
1
1
Panc1
1
1
glomerular visceral epithelial cell
1
1
+ See 3 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
endothelial cell of umbilical vein
2
1
1
osteoblast
1
1
1
kidney glomerular epithelial cell
1
1
+ See 3 more…
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
19
1
1
adipocyte
4
6
cardiomyocytes (cardiac muscle cell)
1
1
1
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