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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
665
total RNA-seq
84
RNA microarray
66
single cell RNA-seq
27
snATAC-seq
22
ATAC-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
731
Transcription
49
DNA accessibility
DNA binding
6
DNA methylation
Date released
707
February, 2021
291
May, 2020
276
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
728
bam
723
tsv
710
bigWig
95
fastq
89
txt
18
bed narrowPeak
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
875
Homo sapiens
Biosample type
665
tissue
96
primary cell
88
cell line
26
in vitro differentiated cells
Organ
457
connective tissue
386
adipose tissue
189
pancreas
150
bone element
65
epithelium
60
artery
60
blood vessel
60
heart
60
vasculature
8
kidney
8
skeleton
6
limb
3
liver
Project
830
AMP
45
HPAP
Genome assembly (visualization)
733
hg19
727
GRCh38
Lab
830
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
134
inconsistent ontology term
32
audit script error
1
inconsistent replicate
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
875 results
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total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue
381
islet of Langerhans
120
bone element
84
bone tissue
58
kidney
5
+ See 14 more…
primary cell
Langerhans cell
12
27
pancreatic alpha cell
7
6
pancreatic beta cell
9
pancreatic acinar cell
5
pancreatic delta cell
4
+ See 12 more…
cell line
smooth muscle cell of the coronary artery
52
8
EndoC_BH1
26
HepG2
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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