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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
78
total RNA-seq
77
ATAC-seq
10
MeRIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
DNase-seq
1
RNA microarray
1
whole genome sequencing assay
Assay category
184
Transcription
84
DNA accessibility
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
5
control
5
nucleotide modification
Date released
707
February, 2021
291
May, 2020
276
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
127
tsv
78
bed narrowPeak
64
xls
57
txt
31
bam
22
bigWig
3
bed bed3+
2
bedpe bed3+
2
hic
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
1
vcf
Organism
291
Homo sapiens
Biosample type
233
tissue
32
cell line
21
in vitro differentiated cells
6
primary cell
Organ
130
kidney
92
heart
14
pancreas
13
liver
11
connective tissue
8
embryo
8
epithelium
6
blood vessel
6
vasculature
2
artery
1
adipose tissue
Project
292
AMP
Genome assembly (visualization)
95
GRCh38
37
hg19
Lab
132
AMP-T2D consortium
128
Katalin Susztak, Upenn
18
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Struan F.A. Grant, CHOP
Audit category:
9
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
292 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
MeRIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
DNase-seq
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
64
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
2
1
1
EndoC_BH1
6
2
H1-hESC
8
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
7
10
adipocyte
1
1
osteoblast
1
1
primary cell
osteoblast
4
1
1
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