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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
DNase-seq
4
Hi-C
2
total RNA-seq
1
pCHi-C
1
snATAC-seq
Assay category
197
DNA accessibility
DNA binding
4
3D chromatin structure
2
Transcription
Date released
181
June, 2019
8
November, 2018
8
October, 2019
3
July, 2019
2
May, 2021
1
February, 2021
1
May, 2022
Available data
1323
bam
1284
bigWig
1122
tsv
490
fastq
475
bed narrowPeak
228
bigBed narrowPeak
204
bed bed3+
199
bed broadPeak
197
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
23
hic
22
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tar
1
vcf
Organism
204
Homo sapiens
Biosample type
175
tissue
26
primary cell
3
cell line
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
18
epithelium
18
ureter
connective tissue
13
vasculature
11
blood vessel
8
pancreas
7
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
204
AMP
Genome assembly (visualization)
197
GRCh38
182
hg19
Lab
202
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
assay_slims!
DNA binding
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
204 results
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Clear Filters
DNase-seq
Hi-C
total RNA-seq
pCHi-C
snATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
primary cell
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
+ See 15 more…
cell line
Panc1
1
1
HepG2
1
See all biosamples
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