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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
total RNA-seq
19
ATAC-seq
9
DNase-seq
4
Hi-C
4
pCHi-C
1
FAIRE-seq
Assay category
DNA binding
30
Transcription
29
DNA accessibility
4
3D chromatin structure
Date released
675
February, 2021
291
May, 2020
272
August, 2021
183
June, 2019
177
May, 2021
149
February, 2023
102
July, 2019
96
May, 2022
67
October, 2019
49
March, 2020
47
September, 2023
40
September, 2020
24
February, 2020
21
August, 2017
19
April, 2020
15
February, 2018
15
May, 2023
11
July, 2018
11
November, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
January, 2019
5
March, 2023
3
October, 2017
2
June, 2018
1
August, 2018
1
December, 2018
1
October, 2022
1
September, 2018
Available data
30
bam
29
bigWig
16
tsv
14
bed narrowPeak
11
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
4
hic
3
bedpe bed3+
1
tar
Organism
67
Homo sapiens
Biosample type
44
tissue
10
primary cell
8
in vitro differentiated cells
5
cell line
Organ
19
eye
11
epithelium
10
limb
9
kidney
7
blood vessel
7
nerve
7
vasculature
pancreas
4
vein
3
artery
3
connective tissue
3
heart
2
brain
2
liver
1
adipose tissue
1
pituitary gland
1
skin of body
Project
67
AMP
Genome assembly (visualization)
37
hg19
29
GRCh38
Lab
67
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
1
audit script error
assay_slims!
DNA binding
organ_slims!
gonad
pancreas
BIOSAMPLE
ASSAY
67 results
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total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
FAIRE-seq
tissue
islet of Langerhans
14
10
4
tibial nerve
4
1
2
heart
2
1
tibial artery
1
2
adipose tissue
1
+ See 2 more…
primary cell
endothelial cell of umbilical vein
2
1
1
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
1
1
cardiomyocytes (cardiac muscle cell)
1
1
1
adipocyte
2
cell line
glomerular visceral epithelial cell
1
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
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