Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
174
single cell RNA-seq
134
total RNA-seq
102
ATAC-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
11
RRBS
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
308
Transcription
DNA binding
135
DNA accessibility
22
DNA methylation
16
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
165
August, 2021
93
February, 2021
66
May, 2022
60
February, 2023
47
September, 2023
33
October, 2019
31
March, 2020
24
February, 2020
19
April, 2020
16
July, 2019
14
August, 2017
8
January, 2021
4
July, 2018
4
November, 2020
3
December, 2019
3
March, 2019
3
May, 2023
2
January, 2018
2
May, 2021
1
August, 2022
1
November, 2018
1
November, 2019
Available data
158
tsv
157
txt
70
bed narrowPeak
32
fastq
30
bam
29
bigWig
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
csv
5
bed bed3
5
bigBed narrowPeak
1
bed bed3+
1
bed broadPeak
1
bedpe
Organism
598
Homo sapiens
Biosample type
600
tissue
480
primary cell
60
cell line
51
in vitro differentiated cells
7
stem cell
Organ
127
kidney
105
heart
92
bone element
80
pancreas
51
eye
50
liver
20
lung
18
brain
16
musculature of body
15
epithelium
12
blood vessel
12
vasculature
11
adipose tissue
11
connective tissue
8
skeleton
7
limb
4
artery
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
505
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
GRCh38
1219
hg19
Lab
366
AMP-T2D consortium
67
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
9
audit script error
assay_slims!
DNA binding
organ_slims!
nerve
assembly!
GRCh38
BIOSAMPLE
ASSAY
600 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
total RNA-seq
ATAC-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
64
49
6
1
1
1
islet of Langerhans
32
46
7
4
3
1
1
4
bone element
84
liver
1
20
20
1
1
1
3
heart left ventricle
18
1
1
1
2
+ See 65 more…
See all biosamples
Download