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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
DNase-seq
5
Hi-C
4
ATAC-seq
2
Capture-C
2
pCHi-C
2
total RNA-seq
Assay category
32
DNA accessibility
DNA binding
5
3D chromatin structure
2
Transcription
Date released
24
June, 2019
4
February, 2023
4
July, 2019
4
October, 2019
2
August, 2021
2
February, 2021
2
May, 2021
1
November, 2020
Available data
629
bam
622
bigWig
524
tsv
344
fastq
153
zippedFastqFolder
103
bed narrowPeak
57
bigBed narrowPeak
43
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
txt
3
cool
2
csv
2
ibed
1
tar
1
vcf
Organism
43
Homo sapiens
Biosample type
tissue
34
primary cell
6
in vitro differentiated cells
3
cell line
Organ
18
epithelium
14
connective tissue
10
kidney
8
brain
8
vasculature
6
blood vessel
4
liver
3
heart
2
pancreas
2
vein
1
eye
1
musculature of body
Project
43
AMP
Genome assembly (visualization)
36
hg19
29
GRCh38
Lab
39
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
5
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_slims!
DNA binding
organ_slims!
small intestine
biosample_type!
tissue
BIOSAMPLE
ASSAY
43 results
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DNase-seq
Hi-C
ATAC-seq
Capture-C
pCHi-C
total RNA-seq
primary cell
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
+ See 19 more…
in vitro differentiated cells
adipocyte
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
cell line
Panc1
1
1
HepG2
1
See all biosamples
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