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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
8
ATAC-seq
6
DNase-seq
4
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
54
Transcription
DNA binding
15
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Date released
60
February, 2021
5
July, 2019
4
June, 2019
4
October, 2019
1
March, 2020
Available data
69
bam
63
bigWig
54
tsv
15
bed narrowPeak
8
bed bed3+
7
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
2
hdf5
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
74
Homo sapiens
Biosample type
60
cell line
tissue
14
primary cell
Organ
380
epithelium
340
pancreas
74
vasculature
71
blood vessel
69
heart
62
artery
58
connective tissue
33
liver
30
kidney
15
embryo
12
brain
9
blood
9
bodily fluid
5
vein
4
musculature of body
3
adipose tissue
2
eye
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
74
AMP
Genome assembly (visualization)
73
hg19
68
GRCh38
Lab
74
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_slims!
DNA binding
organ_slims!
small intestine
biosample_type!
tissue
BIOSAMPLE
ASSAY
74 results
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total RNA-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
RRBS
cell line
smooth muscle cell of the coronary artery
52
8
primary cell
endothelial cell of umbilical vein
2
2
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
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