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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
37
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
DNA binding
138
Transcription
38
DNA accessibility
4
3D chromatin structure
Date released
89
May, 2021
26
February, 2021
17
August, 2021
15
February, 2018
13
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2017
1
August, 2018
Available data
145
bam
139
bigWig
131
tsv
21
fastq
18
bed narrowPeak
7
bedpe bed3+
5
bed bed3
4
bed bed3+
4
bed bedgraph
4
hic
3
bigBed narrowPeak
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
189
Homo sapiens
Biosample type
1869
tissue
809
primary cell
189
in vitro differentiated cells
178
cell line
7
stem cell
Organ
26
connective tissue
7
embryo
2
epithelium
1
adipose tissue
1
heart
Project
189
AMP
Genome assembly (visualization)
171
hg19
145
GRCh38
4
hg18
Lab
179
AMP-T2D consortium
10
Kyle Gaulton, UCSD
Struan F.A. Grant, CHOP
Audit category:
107
inconsistent ontology term
2
audit script error
assay_slims!
DNA binding
organ_slims!
small intestine
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
189 results
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total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
1
1
neural progenitor cell
7
10
adipocyte
5
7
1
embryonic stem cell
7
5
1
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