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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
total RNA-seq
10
Hi-C
4
ATAC-seq
2
pCHi-C
Assay category
13
Transcription
10
3D chromatin structure
4
DNA accessibility
DNA binding
Date released
569
February, 2021
233
May, 2020
193
May, 2021
164
July, 2018
164
June, 2019
103
August, 2017
91
July, 2019
49
April, 2018
48
November, 2019
45
February, 2023
40
September, 2018
39
May, 2022
39
October, 2019
31
August, 2021
29
March, 2020
15
February, 2018
9
November, 2018
6
November, 2020
6
October, 2017
5
December, 2019
5
January, 2019
5
September, 2017
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
2
October, 2018
1
May, 2023
Available data
17
bigWig
15
tsv
13
bam
12
bedpe bed3+
10
hic
2
ibed
Organism
29
Homo sapiens
Biosample type
16
tissue
6
cell line
6
in vitro differentiated cells
1
primary cell
Organ
8
pancreas
5
epithelium
4
heart
4
musculature of body
3
blood vessel
3
vasculature
2
liver
1
vein
Project
27
AMP
2
T1D
Genome assembly (visualization)
29
hg19
13
GRCh38
Lab
29
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
assay_slims!
DNA binding
organ_slims!
spleen
BIOSAMPLE
ASSAY
29 results
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total RNA-seq
Hi-C
ATAC-seq
pCHi-C
tissue
psoas muscle
2
2
aorta
1
1
heart left ventricle
1
1
heart right ventricle
1
1
islet of Langerhans
2
+ See 2 more…
cell line
EndoC_BH1
2
2
early embryonic cell
2
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
1
1
lymphocyte of B lineage (iPSC)
1
1
1
primary cell
endothelial cell of umbilical vein
1
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