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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
519
total RNA-seq
84
RNA microarray
27
snATAC-seq
22
ATAC-seq
18
single cell RNA-seq
3
snDrop-seq
2
pCHi-C
Assay category
537
Transcription
49
DNA accessibility
DNA binding
Date released
675
February, 2021
291
May, 2020
272
August, 2021
183
June, 2019
177
May, 2021
149
February, 2023
102
July, 2019
96
May, 2022
67
October, 2019
49
March, 2020
47
September, 2023
40
September, 2020
24
February, 2020
21
August, 2017
19
April, 2020
15
February, 2018
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
8
November, 2018
6
November, 2019
6
November, 2020
5
January, 2019
5
March, 2023
2
June, 2018
2
October, 2017
1
August, 2018
1
December, 2018
1
October, 2022
1
September, 2018
Available data
538
bam
527
tsv
520
bigWig
89
txt
39
fastq
18
bed narrowPeak
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
675
Homo sapiens
Biosample type
545
tissue
62
cell line
42
primary cell
26
in vitro differentiated cells
Organ
455
connective tissue
386
adipose tissue
150
bone element
60
artery
60
blood vessel
60
heart
60
vasculature
32
epithelium
pancreas
8
kidney
8
skeleton
6
limb
3
liver
Project
636
AMP
39
HPAP
Genome assembly (visualization)
543
hg19
537
GRCh38
Lab
636
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
102
inconsistent ontology term
32
audit script error
1
inconsistent replicate
assay_slims!
DNA binding
organ_slims!
spleen
pancreas
BIOSAMPLE
ASSAY
675 results
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total RNA-seq
RNA microarray
snATAC-seq
ATAC-seq
single cell RNA-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
+ See 13 more…
cell line
smooth muscle cell of the coronary artery
52
8
HepG2
1
1
primary cell
Langerhans cell
27
12
osteoblast
1
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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