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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
DNA binding
6
DNA accessibility
6
DNA methylation
Date released
386
February, 2021
12
July, 2019
7
August, 2017
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
404
bigWig
403
bam
401
tsv
6
fastq
4
bed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed narrowPeak
1
bedpe bed3+
Organism
415
Homo sapiens
Biosample type
413
tissue
2
primary cell
1
in vitro differentiated cells
Organ
720
pancreas
522
connective tissue
416
adipose tissue
376
epithelium
233
liver
229
heart
221
kidney
159
bone element
123
vasculature
122
blood vessel
103
artery
52
eye
36
brain
24
musculature of body
20
limb
20
lung
16
skeleton
15
embryo
9
blood
9
bodily fluid
6
nerve
4
spleen
3
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
416
AMP
Genome assembly (visualization)
405
hg19
404
GRCh38
Lab
416
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
416 results
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total RNA-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
3
3
1
subcutaneous adipose tissue
7
1
1
1
omental fat pad
5
1
1
subcutaneous abdominal adipose tissue
3
visceral abdominal adipose tissue
3
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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