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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
6
WGBS
4
ATAC-seq
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
DNA binding
6
DNA methylation
4
DNA accessibility
Date released
386
February, 2021
12
July, 2019
6
August, 2017
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
Available data
406
bigWig
405
bam
401
tsv
7
fastq
6
bed narrowPeak
bigBed narrowPeak
2
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
413
Homo sapiens
Biosample type
411
tissue
2
primary cell
1
in vitro differentiated cells
Organ
696
pancreas
518
connective tissue
414
adipose tissue
355
epithelium
233
liver
229
heart
222
kidney
159
bone element
122
vasculature
121
blood vessel
103
artery
52
eye
35
brain
24
musculature of body
20
limb
20
lung
16
skeleton
15
embryo
9
blood
9
bodily fluid
6
nerve
4
spleen
2
intestine
2
pericardium
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
414
AMP
Genome assembly (visualization)
403
GRCh38
403
hg19
Lab
414
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
414 results
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total RNA-seq
WGBS
ATAC-seq
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
3
2
1
subcutaneous adipose tissue
7
1
1
omental fat pad
5
1
1
subcutaneous abdominal adipose tissue
3
visceral abdominal adipose tissue
3
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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