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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
total RNA-seq
19
ATAC-seq
7
DNase-seq
4
single cell RNA-seq
3
pCHi-C
2
Capture-C
1
Hi-C
1
RRBS
Assay category
DNA binding
80
Transcription
26
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Date released
69
February, 2021
13
February, 2023
6
July, 2019
6
November, 2020
5
June, 2019
4
August, 2021
2
April, 2018
2
July, 2018
2
May, 2021
2
October, 2019
1
August, 2017
1
March, 2020
Available data
89
bigWig
86
bam
77
tsv
14
bed bed3+
11
bed narrowPeak
9
bigBed narrowPeak
7
bed broadPeak
7
bigBed broadPeak
6
bed bed3
4
bed bedgraph
4
fastq
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
113
Homo sapiens
Biosample type
58
tissue
29
in vitro differentiated cells
25
primary cell
1
stem cell
Organ
728
pancreas
531
connective tissue
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
112
AMP
1
T1D
Genome assembly (visualization)
106
hg19
85
GRCh38
Lab
108
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
7
inconsistent ontology term
assay_slims!
DNA binding
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
113 results
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total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
pCHi-C
Capture-C
Hi-C
RRBS
tissue
bone tissue
58
in vitro differentiated cells
adipocyte
5
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
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primary cell
osteoblast
5
2
1
1
cardiac fibroblast
3
1
pancreatic stellate cell
4
brain pericyte
1
1
adult endothelial progenitor cell
1
+ See 5 more…
stem cell
mesenchymal stem cell
1
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