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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
total RNA-seq
19
ATAC-seq
7
DNase-seq
4
single cell RNA-seq
3
pCHi-C
2
Capture-C
Assay category
DNA binding
76
Transcription
26
DNA accessibility
Date released
69
February, 2021
13
February, 2023
July, 2019
6
November, 2020
5
June, 2019
4
August, 2021
2
April, 2018
2
July, 2018
2
May, 2021
2
October, 2019
1
August, 2017
1
March, 2020
Available data
84
bigWig
82
bam
73
tsv
13
bed bed3+
11
bed narrowPeak
9
bigBed narrowPeak
7
bed broadPeak
7
bigBed broadPeak
6
bed bed3
4
bed bedgraph
4
fastq
Organism
107
Homo sapiens
Biosample type
58
tissue
29
in vitro differentiated cells
19
primary cell
1
stem cell
Organ
722
pancreas
513
connective tissue
adipose tissue
382
epithelium
291
kidney
234
heart
229
liver
159
bone element
122
vasculature
120
blood vessel
104
artery
55
eye
51
limb
50
brain
47
musculature of body
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
106
AMP
1
T1D
Genome assembly (visualization)
100
hg19
81
GRCh38
Lab
102
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
assay_slims!
DNA binding
organ_slims!
adipose tissue
month_released!
July, 2019
BIOSAMPLE
ASSAY
107 results
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total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
pCHi-C
Capture-C
tissue
bone tissue
58
in vitro differentiated cells
adipocyte
5
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 1 more…
primary cell
osteoblast
5
2
1
1
pancreatic stellate cell
4
cardiac fibroblast
3
adult endothelial progenitor cell
1
brain pericyte
1
+ See 1 more…
stem cell
mesenchymal stem cell
1
See all biosamples
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