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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
530
total RNA-seq
70
ATAC-seq
13
DNase-seq
6
WGBS
6
single cell RNA-seq
5
pCHi-C
3
small RNA-seq
2
Capture-C
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
539
Transcription
DNA binding
83
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Date released
515
February, 2021
49
February, 2023
21
July, 2019
8
August, 2017
8
June, 2019
7
August, 2021
6
November, 2020
6
October, 2019
4
February, 2020
2
April, 2018
2
July, 2018
2
March, 2020
2
May, 2021
1
August, 2018
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
559
bam
555
bigWig
536
tsv
66
bed narrowPeak
20
bed bed3+
17
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
fastq
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
637
Homo sapiens
Biosample type
518
tissue
60
cell line
30
in vitro differentiated cells
29
primary cell
1
stem cell
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
637
AMP
1
T1D
Genome assembly (visualization)
594
GRCh38
581
hg19
Lab
633
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
638 results
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total RNA-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
pCHi-C
small RNA-seq
Capture-C
Hi-C
RNA microarray
RRBS
tissue
adipose tissue
382
3
3
1
bone tissue
58
coronary artery
1
36
2
subcutaneous adipose tissue
7
1
1
1
omental fat pad
5
1
2
1
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cell line
smooth muscle cell of the coronary artery
52
8
in vitro differentiated cells
adipocyte
5
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 2 more…
primary cell
osteoblast
5
2
1
1
cardiac fibroblast
3
1
pancreatic stellate cell
4
brain pericyte
1
1
mesenchymal stem cell of adipose
1
1
+ See 8 more…
stem cell
mesenchymal stem cell
1
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