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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
total RNA-seq
42
DNase-seq
31
ATAC-seq
8
Hi-C
6
WGBS
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
DNA binding
200
Transcription
73
DNA accessibility
8
3D chromatin structure
8
DNA methylation
1
DNA sequencing
Date released
144
May, 2020
40
May, 2022
34
June, 2019
15
July, 2019
13
August, 2021
12
October, 2019
9
February, 2021
6
August, 2017
5
December, 2019
5
January, 2019
4
February, 2020
4
November, 2018
3
March, 2020
1
December, 2018
Available data
233
bigWig
220
bam
181
tsv
72
bed narrowPeak
43
bed bed3+
42
bigBed narrowPeak
41
bed broadPeak
41
bigBed broadPeak
13
fastq
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
295
Homo sapiens
Biosample type
262
tissue
23
cell line
10
primary cell
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
295
AMP
Genome assembly (visualization)
244
hg19
220
GRCh38
Lab
242
AMP-T2D consortium
40
Karen Mohlke, UNC
13
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
1
inconsistent replicate
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
295 results
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total RNA-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
2
20
1
3
1
1
1
1
muscle of arm
17
muscle of leg
13
1
right lobe of liver
3
2
1
1
2
tibial nerve
5
2
1
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cell line
HepG2
14
1
2
1
2
2
1
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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