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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
total RNA-seq
20
ATAC-seq
6
MeRIP-seq
2
Capture-C
2
DNase-seq
1
Hi-C
1
RRBS
1
single cell RNA-seq
Assay category
35
Transcription
DNA binding
22
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
3
control
3
nucleotide modification
Date released
26
February, 2021
21
May, 2021
6
November, 2020
4
March, 2020
3
November, 2019
2
August, 2021
2
June, 2019
1
July, 2018
1
July, 2019
1
October, 2019
Available data
39
bam
39
bigWig
36
tsv
4
bed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
fastq
1
hic
Organism
67
Homo sapiens
Biosample type
61
cell line
4
primary cell
1
in vitro differentiated cells
1
tissue
Organ
84
bone element
66
epithelium
66
pancreas
8
connective tissue
7
kidney
2
embryo
2
heart
1
adipose tissue
1
brain
1
limb
1
liver
1
musculature of body
1
stomach
1
urinary bladder
1
vasculature
Project
65
AMP
2
T1D
Genome assembly (visualization)
43
hg19
39
GRCh38
Lab
61
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
67
inconsistent ontology term
5
audit script error
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
67 results
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total RNA-seq
ATAC-seq
MeRIP-seq
Capture-C
DNase-seq
Hi-C
RRBS
single cell RNA-seq
cell line
EndoC_BH1
33
19
6
2
1
primary cell
epithelial cell of proximal tubule
1
1
Liver fetal (hepatocyte)
1
pancreatic acinar cell
1
in vitro differentiated cells
intermediate endothelial cell
1
tissue
muscle of leg
1
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