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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
DNase-seq
10
snATAC-seq
9
single cell RNA-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
1
pCHi-C
Assay category
DNA binding
54
DNA accessibility
16
Transcription
4
3D chromatin structure
1
DNA methylation
Date released
32
June, 2019
19
April, 2020
10
October, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
March, 2020
Available data
49
bam
44
bed narrowPeak
43
bigWig
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
36
bigBed narrowPeak
8
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
75
Homo sapiens
Biosample type
76
tissue
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
57
AMP
19
LungMap
Genome assembly (visualization)
49
GRCh38
48
hg19
Lab
57
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
76 results
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DNase-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
lung
10
9
1
muscle of arm
17
muscle of leg
13
1
tibial nerve
2
1
5
gastrocnemius medialis
1
4
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