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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
DNase-seq
10
snATAC-seq
9
single cell RNA-seq
8
ATAC-seq
7
total RNA-seq
1
WGBS
1
pCHi-C
Assay category
DNA binding
54
DNA accessibility
16
Transcription
3D chromatin structure
1
DNA methylation
Date released
32
June, 2019
19
April, 2020
10
October, 2019
6
February, 2021
3
February, 2020
1
July, 2019
1
March, 2020
Available data
49
bam
44
bed narrowPeak
43
bigWig
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
36
bigBed narrowPeak
8
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
71
Homo sapiens
Biosample type
72
tissue
Organ
719
pancreas
530
connective tissue
418
adipose tissue
387
epithelium
301
kidney
256
heart
235
liver
159
bone element
129
vasculature
126
blood vessel
107
artery
65
brain
56
eye
52
limb
51
musculature of body
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
3
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
53
AMP
19
LungMap
Genome assembly (visualization)
49
GRCh38
48
hg19
Lab
53
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
3D chromatin structure
BIOSAMPLE
ASSAY
72 results
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DNase-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
WGBS
pCHi-C
tissue
lung
10
9
1
muscle of arm
17
muscle of leg
13
1
tibial nerve
2
1
5
tibial artery
2
1
1
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