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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
DNase-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
1
pCHi-C
Assay category
DNA binding
44
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Date released
32
June, 2019
10
October, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
March, 2020
Available data
49
bam
44
bed narrowPeak
43
bigWig
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
36
bigBed narrowPeak
8
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
57
Homo sapiens
Biosample type
57
tissue
Organ
526
connective tissue
507
pancreas
418
adipose tissue
259
heart
237
epithelium
186
liver
158
bone element
134
vasculature
131
blood vessel
111
kidney
107
artery
68
brain
57
musculature of body
56
eye
56
limb
18
ureter
16
skeleton
15
embryo
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
1
adrenal gland
1
blood
1
bodily fluid
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
57
AMP
Genome assembly (visualization)
49
GRCh38
48
hg19
Lab
57
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
57 results
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DNase-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
muscle of arm
17
muscle of leg
13
1
tibial nerve
2
1
5
gastrocnemius medialis
1
4
tibial artery
2
1
1
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