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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
RRBS
5
total RNA-seq
2
Hi-C
2
small RNA-seq
1
ATAC-seq
1
DNase-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
DNA binding
8
Transcription
5
DNA methylation
3
DNA accessibility
2
3D chromatin structure
Date released
5
July, 2019
5
March, 2020
4
August, 2017
2
May, 2022
1
February, 2020
1
January, 2018
1
June, 2019
Available data
8
bigWig
8
tsv
7
bam
3
bed bedMethyl
3
bigBed bedMethyl
2
bed bed3+
2
bedpe bed3+
2
fastq
2
hic
1
bed broadPeak
1
bed narrowPeak
1
bigBed broadPeak
1
bigBed narrowPeak
1
txt
Organism
19
Homo sapiens
Biosample type
15
tissue
4
primary cell
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
19
AMP
Genome assembly (visualization)
14
hg19
7
GRCh38
Lab
19
AMP-T2D consortium
Audit category:
1
audit script error
assay_slims!
DNA binding
organ_slims!
limb
BIOSAMPLE
ASSAY
19 results
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Clear Filters
RRBS
total RNA-seq
Hi-C
small RNA-seq
ATAC-seq
DNase-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
4
1
1
1
1
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
1
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