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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
DNase-seq
11
total RNA-seq
6
Hi-C
5
RRBS
2
ATAC-seq
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
DNA binding
38
DNA accessibility
14
Transcription
6
3D chromatin structure
6
DNA methylation
Date released
33
June, 2019
10
July, 2019
7
October, 2019
5
March, 2020
4
August, 2017
3
February, 2020
2
May, 2022
1
January, 2018
Available data
48
bigWig
47
bam
36
bed bed3+
36
bed narrowPeak
35
bed broadPeak
35
bigBed broadPeak
35
bigBed narrowPeak
14
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
65
Homo sapiens
Biosample type
61
tissue
4
primary cell
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
65
AMP
Genome assembly (visualization)
53
hg19
47
GRCh38
Lab
65
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
65 results
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DNase-seq
total RNA-seq
Hi-C
RRBS
ATAC-seq
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
1
skeletal muscle tissue
1
4
1
1
1
1
tibial nerve
2
5
1
gastrocnemius medialis
1
4
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primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
1
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