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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
152
ATAC-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
Transcription
DNA binding
173
DNA accessibility
53
DNA methylation
9
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
98
May, 2022
22
November, 2019
16
May, 2021
14
February, 2023
14
September, 2018
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
February, 2021
6
March, 2020
5
August, 2017
5
March, 2019
5
October, 2017
5
October, 2019
5
September, 2017
4
June, 2019
3
August, 2021
3
October, 2022
3
September, 2020
2
July, 2019
1
August, 2022
Available data
80
zippedFastqFolder
79
bam
74
bed narrowPeak
71
fastq
56
bigWig
32
bigBed narrowPeak
9
bed broadPeak
9
tsv
8
bed bed3+
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
3
cool
1
bedpe
1
hdf5
Organism
248
Homo sapiens
Biosample type
121
primary cell
97
tissue
31
cell line
Organ
249
pancreas
194
epithelium
177
kidney
97
bone element
93
heart
67
vasculature
64
blood vessel
50
connective tissue
49
artery
49
limb
48
musculature of body
46
liver
44
brain
37
eye
18
ureter
17
adipose tissue
12
skeleton
11
lung
9
blood
9
bodily fluid
5
spleen
5
vein
3
nerve
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
129
AMP
99
HPAP
21
T1D
Genome assembly (visualization)
89
hg19
72
GRCh38
Lab
99
Klaus Kaestner, Upenn
94
AMP-T2D consortium
39
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
28
inconsistent ontology term
4
audit script error
Audit category:
1
inconsistent assembly
assay_slims!
DNA binding
Transcription
BIOSAMPLE
ASSAY
249 results
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Clear Filters
ATAC-seq
WGBS
snATAC-seq
MeRIP-seq
Hi-C
DNase-seq
Capture-C
FAIRE-seq
RRBS
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
primary cell
pancreatic alpha cell
35
31
1
pancreatic beta cell
23
16
1
pancreatic acinar cell
9
1
pancreatic ductal cell
4
tissue
islet of Langerhans
58
7
4
3
1
1
1
pancreas
2
4
1
2
1
1
1
body of pancreas
4
2
4
cell line
EndoC_BH1
19
6
1
2
1
Panc1
1
1
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