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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
total RNA-seq
19
ATAC-seq
6
MeRIP-seq
2
Capture-C
1
Hi-C
Assay category
33
Transcription
19
DNA accessibility
DNA binding
1
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
26
February, 2021
20
May, 2021
6
November, 2020
July, 2018
4
March, 2020
3
November, 2019
2
August, 2021
Available data
35
bigWig
34
bam
34
tsv
1
bed narrowPeak
1
bedpe bed3+
1
hic
Organism
61
Homo sapiens
Biosample type
61
cell line
Organ
84
bone element
65
epithelium
61
pancreas
8
connective tissue
7
kidney
2
embryo
2
heart
1
adipose tissue
1
brain
1
limb
1
liver
1
musculature of body
1
stomach
1
urinary bladder
1
vasculature
Project
59
AMP
2
T1D
Genome assembly (visualization)
37
hg19
34
GRCh38
Lab
55
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
61
inconsistent ontology term
4
audit script error
assay_slims!
DNA binding
month_released!
July, 2018
BIOSAMPLE
ASSAY
61 results
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total RNA-seq
ATAC-seq
MeRIP-seq
Capture-C
Hi-C
cell line
EndoC_BH1
33
19
6
2
1
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