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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
296
ChIP-seq
89
total RNA-seq
ATAC-seq
5
DNase-seq
1
FAIRE-seq
Assay category
296
DNA binding
89
Transcription
DNA methylation
6
DNA accessibility
Target of assay
199
histone modification
198
histone
109
broad histone mark
88
narrow histone mark
50
control
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
Date released
687
February, 2021
406
November, 2017
391
August, 2017
364
May, 2021
292
October, 2019
243
August, 2021
241
May, 2020
218
June, 2019
168
July, 2018
120
May, 2019
102
February, 2023
94
December, 2017
82
May, 2022
81
November, 2018
80
April, 2019
76
October, 2018
75
July, 2019
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
275
bam
274
fastq
265
bigWig
137
bed narrowPeak
89
tsv
85
tagAlign
41
bed broadPeak
37
bigBed narrowPeak
33
bed bed3+
15
bigBed broadPeak
Organism
384
Homo sapiens
Biosample type
268
tissue
68
in vitro differentiated cells
55
primary cell
Organ
185
pancreas
118
connective tissue
50
adipose tissue
49
liver
26
epithelium
22
musculature of body
Project
391
AMP
Genome assembly (visualization)
267
hg19
242
GRCh38
Lab
391
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA methylation
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
391 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
liver
48
subcutaneous abdominal adipose tissue
36
skeletal muscle tissue
22
pancreas
14
+ See 3 more…
in vitro differentiated cells
adipocyte
67
1
primary cell
skeletal muscle myoblast
15
2
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
See all biosamples
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