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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
18
small RNA-seq
8
Hi-C
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
65
Transcription
DNA methylation
8
3D chromatin structure
8
DNA accessibility
Target of assay
3
control
Date released
701
February, 2021
291
May, 2020
276
August, 2021
233
May, 2021
205
February, 2023
187
June, 2019
168
July, 2018
159
May, 2022
100
August, 2017
81
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
11
November, 2018
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
77
bigWig
73
bam
65
tsv
7
bed narrowPeak
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
81
Homo sapiens
Biosample type
59
tissue
22
primary cell
Organ
17
connective tissue
16
brain
15
heart
12
adipose tissue
9
blood vessel
9
vasculature
8
liver
8
musculature of body
7
epithelium
7
kidney
4
limb
4
pancreas
3
artery
1
pericardium
Project
81
AMP
Genome assembly (visualization)
76
hg19
71
GRCh38
Lab
81
AMP-T2D consortium
assay_slims!
DNA methylation
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
81 results
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total RNA-seq
small RNA-seq
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
omental fat pad
4
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
gastrocnemius medialis
4
heart left ventricle
2
2
+ See 18 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 14 more…
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