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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
ChIP-seq
6
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
8
DNA accessibility
DNA methylation
Date released
386
February, 2021
12
July, 2019
2
February, 2020
1
August, 2017
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
404
bigWig
403
bam
401
tsv
6
bed narrowPeak
4
bigBed narrowPeak
4
fastq
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
Organism
411
Homo sapiens
Biosample type
409
tissue
2
primary cell
1
in vitro differentiated cells
Organ
675
pancreas
524
connective tissue
412
adipose tissue
342
epithelium
298
kidney
249
heart
232
liver
159
bone element
131
vasculature
129
blood vessel
107
artery
66
brain
55
eye
55
limb
51
musculature of body
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
vein
3
spleen
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
412
AMP
Genome assembly (visualization)
407
hg19
404
GRCh38
Lab
412
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA methylation
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
412 results
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total RNA-seq
ATAC-seq
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
3
1
subcutaneous adipose tissue
7
1
1
1
omental fat pad
5
1
1
2
visceral abdominal adipose tissue
3
adipose tissue(adipose white tissue)
1
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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