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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
73
ChIP-seq
6
ATAC-seq
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
398
Transcription
73
DNA binding
8
DNA accessibility
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
51
August, 2017
23
October, 2018
9
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
437
bam
420
bigWig
398
tsv
41
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
Organism
481
Homo sapiens
Biosample type
480
tissue
1
in vitro differentiated cells
1
primary cell
Organ
891
pancreas
781
liver
674
connective tissue
482
adipose tissue
471
epithelium
349
kidney
342
heart
280
brain
233
vasculature
228
blood vessel
159
bone element
141
artery
121
limb
88
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
482
AMP
Genome assembly (visualization)
423
hg19
419
GRCh38
Lab
482
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_slims!
DNA methylation
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
482 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
1
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
2
white adipose tissue
12
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in vitro differentiated cells
white fat cell
1
primary cell
mesenchymal stem cell of adipose
1
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