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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
97
total RNA-seq
87
single cell RNA-seq
72
ChIP-seq
56
snATAC-seq
17
pCHi-C
9
Hi-C
4
DNase-seq
1
FAIRE-seq
Assay category
151
DNA accessibility
Date released
100
May, 2020
39
May, 2022
12
February, 2023
Available data
45
bam
45
bigWig
39
zippedFastqFolder
12
tsv
Organism
151
Homo sapiens
Biosample type
151
primary cell
102
tissue
25
in vitro differentiated cells
19
cell line
Organ
39
epithelium
39
pancreas
Project
112
AMP
39
HPAP
Genome assembly (visualization)
84
hg19
GRCh38
Lab
112
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
10
inconsistent ontology term
assay_slims!
DNA methylation
assembly!
GRCh38
BIOSAMPLE
ASSAY
151 results
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ATAC-seq
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic alpha cell
22
pancreatic beta cell
13
macrophage
11
pancreatic acinar cell
4
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
oligodendrocyte
3
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
central memory CD8-positive, alpha-beta T cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
gamma-delta T cell
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
monocyte
2
naive B cel
2
naive regulatory T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
regulatory T cell
2
immature natural killer cell
1
myeloid dendritic cell
1
natural killer cell
1
plasma cell
1
plasmacytoid dendritic cell
1
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