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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
34
ATAC-seq
19
total RNA-seq
18
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
52
DNA accessibility
19
Transcription
Date released
30
May, 2021
24
May, 2022
23
February, 2023
16
January, 2021
Available data
24
bam
24
fastq
18
bed narrowPeak
7
bigWig
6
txt
2
bed bed3+
Organism
93
Homo sapiens
Biosample type
52
tissue
26
primary cell
10
in vitro differentiated cells
5
cell line
Organ
51
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
56
T1D
37
AMP
Genome assembly (visualization)
121
hg19
GRCh38
Lab
544
AMP-T2D consortium
267
Klaus Kaestner, Upenn
93
Kyle Gaulton, UCSD
67
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
19
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
inconsistent ontology term
assay_slims!
DNA methylation
assembly!
GRCh38
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
93 results
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ATAC-seq
total RNA-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
tissue
islet of Langerhans
29
11
6
pancreas
1
4
thymus
1
primary cell
peripheral blood mononuclear cell
8
CD8-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 11 more…
in vitro differentiated cells
embryonic stem cell
5
5
cell line
EndoC_BH1
3
2
See all biosamples
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