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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
ChIP-seq
30
total RNA-seq
20
ATAC-seq
Hi-C
3
pCHi-C
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
188
DNA binding
31
Transcription
21
DNA accessibility
DNA methylation
1
DNA sequencing
Target of assay
107
control
50
transcription factor
31
histone
31
histone modification
18
narrow histone mark
13
broad histone mark
6
RNA binding protein
1
chromatin remodeller
1
recombinant protein
Date released
94
November, 2017
40
May, 2022
32
May, 2020
31
August, 2017
31
August, 2021
13
December, 2017
2
February, 2021
1
February, 2020
1
March, 2020
1
November, 2018
Available data
146
bam
115
fastq
89
bigWig
72
bed narrowPeak
53
tagAlign
30
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
12
tsv
3
tar
1
bed bed3+
1
csv
1
vcf
Organism
246
Homo sapiens
Biosample type
127
cell line
117
tissue
1
in vitro differentiated cells
1
primary cell
Organ
254
pancreas
246
liver
169
epithelium
144
kidney
120
heart
112
connective tissue
93
bone element
64
brain
63
adipose tissue
54
eye
38
vasculature
37
blood vessel
32
musculature of body
22
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
9
spleen
8
embryo
8
skeleton
8
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
246
AMP
Genome assembly (visualization)
593
hg19
GRCh38
Lab
176
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
Audit category:
7
missing controlled_by
Audit category:
inconsistent control read length
2
inconsistent control run_type
assay_slims!
DNA methylation
assembly!
GRCh38
audit.WARNING.category!
inconsistent control read length
assay_title!
Hi-C
BIOSAMPLE
ASSAY
246 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
113
9
2
2
1
tissue
liver
70
20
20
1
1
right lobe of liver
3
1
1
in vitro differentiated cells
hepatocyte
1
primary cell
hepatocyte
1
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