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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
single cell RNA-seq
5
Hi-C
3
total RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
26
DNA binding
5
3D chromatin structure
3
Transcription
1
DNA accessibility
DNA methylation
Target of assay
21
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
14
October, 2019
11
May, 2019
3
February, 2020
3
March, 2020
2
February, 2021
2
July, 2019
1
November, 2017
Available data
27
bam
6
bigWig
4
tsv
3
hic
2
bed bed3+
2
bed broadPeak
2
bedpe bed3+
2
bigBed broadPeak
2
hdf5
2
tagAlign
1
bed narrowPeak
1
bigBed narrowPeak
1
fastq
1
tar
Organism
36
Homo sapiens
Biosample type
21
tissue
13
primary cell
2
cell line
Organ
262
pancreas
253
liver
177
epithelium
113
connective tissue
93
bone element
81
kidney
67
brain
63
adipose tissue
54
eye
37
musculature of body
37
vasculature
36
blood vessel
30
heart
26
limb
15
blood
15
bodily fluid
12
nerve
11
artery
11
lung
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
36
AMP
Genome assembly (visualization)
GRCh38
159
hg19
Lab
36
AMP-T2D consortium
Audit category:
1
audit script error
assay_slims!
DNA methylation
assembly!
GRCh38
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
Hi-C
total RNA-seq
FAIRE-seq
pCHi-C
tissue
tibial artery
5
1
aorta
2
1
1
ascending aorta
3
1
thoracic aorta
4
coronary artery
2
1
primary cell
endothelial cell of umbilical vein
7
2
1
brain microvascular endothelial cell
1
1
endothelial cell of hepatic sinusoid
1
cell line
smooth muscle cell of the coronary artery
2
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