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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
6
single cell RNA-seq
3
Hi-C
3
total RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
26
DNA binding
9
Transcription
3
3D chromatin structure
1
DNA accessibility
DNA methylation
Target of assay
21
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
14
October, 2019
11
May, 2019
6
August, 2021
3
February, 2020
3
March, 2020
2
February, 2021
1
November, 2017
Available data
27
bam
10
tsv
6
bigWig
3
hic
bed bed3+
2
bed broadPeak
2
bedpe bed3+
2
bigBed broadPeak
2
hdf5
2
tagAlign
1
bed narrowPeak
1
bigBed narrowPeak
1
fastq
1
tar
Organism
40
Homo sapiens
Biosample type
27
tissue
11
primary cell
2
cell line
Organ
262
pancreas
252
liver
175
epithelium
145
kidney
123
heart
105
connective tissue
93
bone element
64
brain
63
adipose tissue
54
eye
41
vasculature
40
blood vessel
37
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
40
AMP
Genome assembly (visualization)
GRCh38
149
hg19
Lab
40
AMP-T2D consortium
Audit category:
1
audit script error
assay_slims!
DNA methylation
assembly!
GRCh38
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
FAIRE-seq
pCHi-C
tissue
aorta
2
4
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
coronary artery
2
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
7
2
1
brain microvascular endothelial cell
1
cell line
smooth muscle cell of the coronary artery
2
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