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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
6
single cell RNA-seq
3
Hi-C
3
total RNA-seq
1
pCHi-C
Assay category
23
DNA binding
9
Transcription
3
3D chromatin structure
DNA methylation
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
11
May, 2019
11
October, 2019
6
August, 2021
3
February, 2020
3
March, 2020
2
February, 2021
Available data
27
bam
10
tsv
bigWig
3
hic
2
bed bed3+
2
bed broadPeak
2
bedpe bed3+
2
bigBed broadPeak
2
hdf5
2
tagAlign
1
bed narrowPeak
1
bigBed narrowPeak
1
fastq
1
tar
Organism
36
Homo sapiens
Biosample type
27
tissue
7
primary cell
2
cell line
Organ
250
pancreas
168
epithelium
160
liver
144
kidney
122
heart
105
connective tissue
93
bone element
60
adipose tissue
59
brain
54
eye
36
blood vessel
36
vasculature
25
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
13
artery
12
nerve
9
spleen
8
skeleton
7
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
36
AMP
Genome assembly (visualization)
GRCh38
11
hg19
Lab
36
AMP-T2D consortium
Audit category:
1
audit script error
assay_slims!
DNA methylation
assembly!
GRCh38
files.file_type!
bigWig
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
pCHi-C
tissue
aorta
2
4
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
coronary artery
2
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
5
2
cell line
smooth muscle cell of the coronary artery
2
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