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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
6
single cell RNA-seq
5
Hi-C
3
total RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
27
DNA binding
9
Transcription
5
3D chromatin structure
1
DNA accessibility
DNA methylation
Target of assay
21
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
15
October, 2019
11
May, 2019
6
August, 2021
3
February, 2020
3
March, 2020
2
February, 2021
2
July, 2019
1
November, 2017
Available data
27
bam
10
tsv
6
bigWig
3
hic
2
bed bed3+
2
bed broadPeak
2
bedpe bed3+
2
bigBed broadPeak
2
hdf5
2
tagAlign
1
bed narrowPeak
1
bigBed narrowPeak
1
fastq
1
tar
Organism
43
Homo sapiens
Biosample type
28
tissue
13
primary cell
2
cell line
Organ
262
pancreas
254
liver
177
epithelium
145
kidney
123
heart
113
connective tissue
93
bone element
67
brain
63
adipose tissue
54
eye
43
vasculature
42
blood vessel
38
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
43
AMP
Genome assembly (visualization)
GRCh38
159
hg19
Lab
43
AMP-T2D consortium
Audit category:
1
audit script error
assay_slims!
DNA methylation
assembly!
GRCh38
BIOSAMPLE
ASSAY
43 results
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ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
FAIRE-seq
pCHi-C
tissue
aorta
2
4
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
coronary artery
2
1
+ See 2 more…
primary cell
endothelial cell of umbilical vein
7
2
1
brain microvascular endothelial cell
1
1
endothelial cell of hepatic sinusoid
1
cell line
smooth muscle cell of the coronary artery
2
See all biosamples
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