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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
4
Hi-C
2
total RNA-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
12
DNA binding
4
3D chromatin structure
DNA methylation
3
Transcription
Target of assay
6
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
9
August, 2017
4
July, 2019
2
February, 2020
2
June, 2019
1
March, 2020
1
May, 2019
1
May, 2022
Available data
3
bam
3
tsv
2
tagAlign
Organism
20
Homo sapiens
Biosample type
18
tissue
2
primary cell
Organ
237
pancreas
225
kidney
166
epithelium
161
liver
157
heart
122
brain
89
bone element
89
connective tissue
69
blood vessel
69
vasculature
59
adipose tissue
48
artery
27
eye
25
limb
20
lung
20
musculature of body
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
20
AMP
Genome assembly (visualization)
hg19
52
GRCh38
Lab
20
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA methylation
assembly!
hg19
BIOSAMPLE
ASSAY
20 results
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ChIP-seq
Hi-C
total RNA-seq
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
9
1
gastrocnemius medialis
4
1
left ventricle myocardium
1
muscle of leg
1
psoas muscle
1
primary cell
skeletal muscle cell
1
skeletal muscle satellite cell
1
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