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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
31
ChIP-seq
6
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
34
DNA accessibility
31
DNA binding
9
Transcription
3D chromatin structure
DNA methylation
Target of assay
26
histone
26
histone modification
16
broad histone mark
10
narrow histone mark
5
control
Date released
34
June, 2019
22
August, 2017
7
May, 2019
4
July, 2019
3
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
59
bigWig
52
bed narrowPeak
47
bam
45
bed broadPeak
39
bigBed narrowPeak
33
bed bed3+
32
bigBed broadPeak
15
tagAlign
9
tsv
1
txt
Organism
75
Homo sapiens
Biosample type
70
tissue
5
primary cell
Organ
804
pancreas
779
liver
658
connective tissue
484
adipose tissue
375
heart
374
epithelium
327
kidney
278
brain
227
vasculature
223
blood vessel
141
artery
116
limb
75
bone element
75
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
31
embryo
23
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
Project
75
AMP
Genome assembly (visualization)
60
hg19
44
GRCh38
Lab
75
AMP-T2D consortium
Audit category:
inconsistent ontology term
1
audit script error
assay_slims!
DNA methylation
3D chromatin structure
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
75 results
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DNase-seq
ChIP-seq
total RNA-seq
small RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
1
1
1
1
muscle of leg
12
7
muscle of arm
17
psoas muscle
2
1
forelimb muscle
1
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primary cell
skeletal muscle cell
1
2
skeletal muscle satellite cell
1
1
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