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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
13
single cell RNA-seq
2
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
68
Transcription
3
DNA accessibility
Date released
57
August, 2021
7
May, 2022
5
February, 2021
2
February, 2023
1
October, 2022
Available data
3096
bam
2902
bigWig
1746
bed narrowPeak
1386
tsv
1326
fastq
1018
bigBed narrowPeak
395
tagAlign
318
bed broadPeak
281
bigBed broadPeak
267
bed bed3+
112
zippedFastqFolder
72
txt
64
xls
18
hic
16
bedpe bed3+
8
bed bed3
8
csv
6
bed bedgraph
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
71
Homo sapiens
Biosample type
69
tissue
2
in vitro differentiated cells
1
cell line
Organ
62
kidney
6
pancreas
bone element
4
skeleton
1
musculature of body
Project
72
AMP
Genome assembly (visualization)
3
hg19
Lab
57
Katalin Susztak, Upenn
7
AMP-T2D consortium
6
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
6
audit script error
inconsistent ontology term
assay_slims!
DNA methylation
audit.ERROR.category!
inconsistent ontology term
organ_slims!
bone element
BIOSAMPLE
ASSAY
72 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
kidney
49
13
islet of Langerhans
6
skeletal muscle tissue
1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
cell line
MIN6
1
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